Brent Pseudogenes

--> -->

<type 'exceptions.IOError'>

Python 2.6.1: /usr/bin/python
Tue Aug 21 13:49:43 2018

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/tables.gersteinlab.org/index.cgi in ()

197 print e.__class__.__name__, "</B><BR>"

198 print "<I>", e , "</I>"

199 print "</td></tr></table>"

200 else:

201 main_html(form)

main_html = <function main_html at 0xb7e29064>, form = FieldStorage(None, None, [MiniFieldStorage('table', 'Brent'), MiniFieldStorage('value', '50')])

/var/www/html/tables.gersteinlab.org/index.cgi in main_html(form=FieldStorage(None, None, [MiniFieldStorage('table', 'Brent'), MiniFieldStorage('value', '50')]))

122 else:

123 Display = DataDisplay(app, key, conn)

124 print Display.display_str()

125

126 print "</FONT></BODY></HTML>"

Display = <DataDisplayer.HumanGenomicDisplay instance at 0xb7e6f92c>, Display.display_str = <bound method HumanGenomicDisplay.display_str of...ayer.HumanGenomicDisplay instance at 0xb7e6f92c>>

/home/www/html/tables.gersteinlab.org/DataDisplayer.py in display_str(self=<DataDisplayer.HumanGenomicDisplay instance at 0xb7e6f92c>)

545 display += self.attributes_box()

546 display += self.id_history()

547 display += self.overlapping_annotations()

548 if 'fragment_browser' in self.app.attributes and self.app.attributes['fragment_browser'] == 'enabled':

549 import yass

display = '<div class="module" id="table">\n<P><table cellsp...d>pseudogene.org</td>\n</tr>\n</tbody></table></P>\n', self = <DataDisplayer.HumanGenomicDisplay instance at 0xb7e6f92c>, self.overlapping_annotations = <bound method HumanGenomicDisplay.overlapping_an...ayer.HumanGenomicDisplay instance at 0xb7e6f92c>>

/home/www/html/tables.gersteinlab.org/DataDisplayer.py in overlapping_annotations(self=<DataDisplayer.HumanGenomicDisplay instance at 0xb7e6f92c>)

424 image = svg.make_svg()

425 file_name = str(time.time()) + ".svg"

426 image.save(conf.MEDIA_LOCATION + file_name)

427 display += "<TD>"

428 display += "<img src=\"%s%s\"></TD>" % (conf.MEDIA_URL, file_name)

image = <svg (1 sub) style='stroke-linejoin:round; strok...nk' viewBox='27375802 0 565.000000 565.000000' />, image.save = <bound method SVG.save of <svg (1 sub) style='st...k' viewBox='27375802 0 565.000000 565.000000' />>, global conf = <module 'conf' from '/home/www/html/tables.gersteinlab.org/conf.pyc'>, conf.MEDIA_LOCATION = '/var/www/html/ted.gersteinlab.org/tables/media/', file_name = '1534873783.37.svg'

/usr/local/lib/python2.6/site-packages/svgfig.py in save(self=<svg (1 sub) style='stroke-linejoin:round; strok...nk' viewBox='27375802 0 565.000000 565.000000' />, fileName='/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg', encoding='utf-8', compresslevel=None)

431

432 else:

433 f = codecs.open(fileName, "w", encoding=encoding)

434 f.write(self.standalone_xml())

435 f.close()

f undefined, global codecs = <module 'codecs' from '/usr/local/lib/python2.6/codecs.pyc'>, codecs.open = <function open at 0xb7f10374>, fileName = '/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg', encoding = 'utf-8'

/usr/local/lib/python2.6/codecs.py in open(filename='/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg', mode='wb', encoding='utf-8', errors='strict', buffering=1)

863 # Force opening of the file in binary mode

864 mode = mode + 'b'

865 file = __builtin__.open(filename, mode, buffering)

866 if encoding is None:

867 return file

builtin file = <type 'file'>, global __builtin__ = <module '__builtin__' (built-in)>, __builtin__.open = <built-in function open>, filename = '/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg', mode = 'wb', buffering = 1

<type 'exceptions.IOError'>: [Errno 2] No such file or directory: '/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg'
      args = (2, 'No such file or directory')
      errno = 2
      filename = '/var/www/html/ted.gersteinlab.org/tables/media/1534873783.37.svg'
      message = ''
      strerror = 'No such file or directory'