Collection :: Human Pseudogenes

Human Pseudogenes

Attributes
Date Created01-11-2009
DescriptionHuman pseudogene sets.

Sets

Brent Pseudogenesview all download
Sourcevan Baren M, Brent M. 2006. Iterative gene prediction and pseudogene removal improves genome annotation. Genome Res 16(5):678-685
DateCreated2009-02-11T09:41:00
DescriptionAll flagged pseudogene fragments found by PPFinder. Pseudogenes were detected as false positives in the prediction of functional protein coding genes.
Genome BuildNCBI36

Chromosome 22 Pseudogenesview all download
SourceZheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. 2005. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. J Mol Biol 349:27-45.
Original Build34
DateCreated2009-02-11T09:41:00
DescriptionPseudogenes identified on chromosome 22.
Genome BuildNCBI36

Cytochrome C Pseudogenesview all download
SourceZhang Z, Gerstein M. 2003. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 312:61-72.
Original Build29
DateCreated2009-02-11T09:41:00
DescriptionCytochrome C pseudogenes.
Genome BuildNCBI36

GAPDH Pseudogenesview all download
Sourcepseudogene.org
Original Build35
DateCreated2009-02-11T09:41:00
DescriptionGAPDH pseudogenes.
Genome BuildNCBI36

Gencode Pseudogenes Release 3view all download
Date Added11-11-09
SourceGENCODE Consortium
TypePseudogenes
Genome BuildGRCh37

HAVANA Pseudogenesview all download
Date Added01-11-2009
DateCreated2009-02-11T09:41:00
Methodhavana_manual_annotation
DescriptionPseudogenes annotated by HAVANA.
Genome BuildNCBI36

Hoppsigen Pseudogenesview all download
SourceKhelifi A, Duret L, Mouchiroud D. 2005. HOPPSIGEN: a database of human and mouse processed pseudogenes. Nucleic Acids Res 33(1):448.
Original Build34
DateCreated2009-02-11T09:41:00
DescriptionProcessed pseudogenes identified by the Hoppsigen group.
Genome BuildNCBI36

Yale Pseudogenes (Ensembl 49)view all download
Sourcepseudogene.org
DateCreated2009-02-11T09:41:00
Methodyale_pseudopipe
DescriptionPseudogenes identified by the Yale PseudoPipe run on Ensembl build 49.
Genome BuildNCBI36

Yale Pseudogenes (Ensembl 50)view all download
DescriptionPseudogenes identified by the Yale PseudoPipe run on Ensembl build 50.
Genome BuildNCBI36
fragment_browserenabled
DateCreated2009-02-11T09:41:00
Sourcepseudogene.org
Methodyale_pseudopipe

Human Pseudogenes (Build 53)view all download
Tax ID9606
Count28,295
TypePseudogenes
Original SearchSets
Genome BuildNCBI36

Human Pseudogenes (Build 55)view all download
Count24483
Genome BuildGRCh37
Tax ID9606
fragment_browserenabled
Build55
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 56)view all download
Count16946
Genome BuildGRCh37
Tax ID9606
Build56
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 57)view all download
Count17364
Genome BuildNCBI37
Tax ID9606
Build57
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 58)view all download
Date Created2010-08-09
Count17032
Genome BuildNCBI37
Tax ID9606
Build58
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 59)view all download
Count17949
Genome BuildGRCh37
Tax ID9606
Build59
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 60)view all download
Count17912
Genome BuildNCBI37
Tax ID9606
Build60
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 61)view all download
Count18076
Genome BuildNCBI37
Tax ID9606
Build61
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 62)view all download
Count17609
Genome BuildNCBI37
Tax ID9606
Build62
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 63)view all download
Count17546
Genome BuildNCBI37
Tax ID9606
Build63
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 64)view all download
Count16340
Genome BuildNCBI37
Tax ID9606
Build64
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 65)view all download
Count17061
Genome BuildNCBI37
Tax ID9606
Build65
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 67)view all download
Count16780
Genome BuildNCBI37
Tax ID9606
Build67
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 68)view all download
Count17172
Genome BuildNCBI37
Tax ID9606
Build68
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 69)view all download
Count16735
Genome BuildNCBI37
Tax ID9606
Build69
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 70)view all download
Count17135
Genome BuildNCBI37
Tax ID9606
Build70
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 71)view all download
Count17027
Genome BuildNCBI37
Tax ID9606
Build71
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 72)view all download
Count16914
Genome BuildNCBI37
Tax ID9606
Build72
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 73)view all download
Count17180
Genome BuildNCBI37
Tax ID9606
Build73
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 74)view all download
Count16901
Genome BuildNCBI37
Tax ID9606
Build74
Typepseudogene
PseudoFamenabled

Human Pseudogenes (Build 76)view all download
Count18137
Genome BuildNCBI38
Tax ID9606
Build76
Typepseudogene
PseudoFamenabled

Mitochondrial Ribosomal Protein Pseudogenesview all download
SourceZhang Z, Gerstein M. 2003. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. Genomics 81:468-80.
Original Build35
DateCreated2009-02-11T09:41:00
DescriptionMitochondrial Ribosomal Protein (MRP) pseudogenes identified in Aug. 2001.
Genome BuildNCBI36

Ribosomal Protein Pseudogenesview all download

Torrents Pseudogenesview all download
SourceTorrents D, Suyama M, Zdobnov E, Bork P. 2003. A genome-wide survey of human pseudogenes. Genome Res 13(12):2559-67.
Original Build34
DateCreated2009-02-11T09:41:00
DescriptionPseudogenes identified by D Torrents and Peer Bork based on human build 34
Genome BuildNCBI36

Transcribed Pseudogenesview all download
SourceHarrison PM, Zheng D, Zhang Z, Carrier N, Gerstein M. 2005. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res 33:2374-83.
Original Build34
DateCreated2009-02-11T09:41:00
DescriptionPseudogenes identified as being transcribed.
Genome BuildNCBI36

UCSC Pseudogenesview all download

UCSC Yontao Pseudogenesview all download
SourceUCSC
Genome BuildNCBI36