| Collection :: Human Pseudogenes |
| Attributes | |
|---|---|
| Date Created | 01-11-2009 |
| Description | Human pseudogene sets. |
| Brent Pseudogenes | view all download |
|---|---|
| Source | van Baren M, Brent M. 2006. Iterative gene prediction and pseudogene removal improves genome annotation. Genome Res 16(5):678-685 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | All flagged pseudogene fragments found by PPFinder. Pseudogenes were detected as false positives in the prediction of functional protein coding genes. |
| Genome Build | NCBI36 |
| Chromosome 22 Pseudogenes | view all download |
|---|---|
| Source | Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. 2005. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. J Mol Biol 349:27-45. |
| Original Build | 34 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Pseudogenes identified on chromosome 22. |
| Genome Build | NCBI36 |
| Cytochrome C Pseudogenes | view all download |
|---|---|
| Source | Zhang Z, Gerstein M. 2003. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 312:61-72. |
| Original Build | 29 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Cytochrome C pseudogenes. |
| Genome Build | NCBI36 |
| GAPDH Pseudogenes | view all download |
|---|---|
| Source | pseudogene.org |
| Original Build | 35 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | GAPDH pseudogenes. |
| Genome Build | NCBI36 |
| Gencode Pseudogenes Release 3 | view all download |
|---|---|
| Date Added | 11-11-09 |
| Source | GENCODE Consortium |
| Type | Pseudogenes |
| Genome Build | GRCh37 |
| HAVANA Pseudogenes | view all download |
|---|---|
| Date Added | 01-11-2009 |
| DateCreated | 2009-02-11T09:41:00 |
| Method | havana_manual_annotation |
| Description | Pseudogenes annotated by HAVANA. |
| Genome Build | NCBI36 |
| Hoppsigen Pseudogenes | view all download |
|---|---|
| Source | Khelifi A, Duret L, Mouchiroud D. 2005. HOPPSIGEN: a database of human and mouse processed pseudogenes. Nucleic Acids Res 33(1):448. |
| Original Build | 34 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Processed pseudogenes identified by the Hoppsigen group. |
| Genome Build | NCBI36 |
| Yale Pseudogenes (Ensembl 49) | view all download |
|---|---|
| Source | pseudogene.org |
| DateCreated | 2009-02-11T09:41:00 |
| Method | yale_pseudopipe |
| Description | Pseudogenes identified by the Yale PseudoPipe run on Ensembl build 49. |
| Genome Build | NCBI36 |
| Yale Pseudogenes (Ensembl 50) | view all download |
|---|---|
| Description | Pseudogenes identified by the Yale PseudoPipe run on Ensembl build 50. |
| Genome Build | NCBI36 |
| fragment_browser | enabled |
| DateCreated | 2009-02-11T09:41:00 |
| Source | pseudogene.org |
| Method | yale_pseudopipe |
| Human Pseudogenes (Build 53) | view all download |
|---|---|
| Tax ID | 9606 |
| Count | 28,295 |
| Type | Pseudogenes |
| Original Search | Sets |
| Genome Build | NCBI36 |
| Human Pseudogenes (Build 55) | view all download |
|---|---|
| Count | 24483 |
| Genome Build | GRCh37 |
| Tax ID | 9606 |
| fragment_browser | enabled |
| Build | 55 |
| Type | pseudogene |
| PseudoFam | enabled |
| Human Pseudogenes (Build 56) | view all download |
|---|---|
| Count | 16946 |
| Genome Build | GRCh37 |
| Tax ID | 9606 |
| Build | 56 |
| Type | pseudogene |
| PseudoFam | enabled |
| Human Pseudogenes (Build 57) | view all download |
|---|---|
| Count | 17364 |
| Genome Build | NCBI37 |
| Tax ID | 9606 |
| Build | 57 |
| Type | pseudogene |
| PseudoFam | enabled |
| Human Pseudogenes (Build 58) | view all download |
|---|---|
| Date Created | 2010-08-09 |
| Count | 17032 |
| Genome Build | NCBI37 |
| Tax ID | 9606 |
| Build | 58 |
| Type | pseudogene |
| PseudoFam | enabled |
| Mitochondrial Ribosomal Protein Pseudogenes | view all download |
|---|---|
| Source | Zhang Z, Gerstein M. 2003. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. Genomics 81:468-80. |
| Original Build | 35 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Mitochondrial Ribosomal Protein (MRP) pseudogenes identified in Aug. 2001. |
| Genome Build | NCBI36 |
| Ribosomal Protein Pseudogenes | view all download |
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| Torrents Pseudogenes | view all download |
|---|---|
| Source | Torrents D, Suyama M, Zdobnov E, Bork P. 2003. A genome-wide survey of human pseudogenes. Genome Res 13(12):2559-67. |
| Original Build | 34 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Pseudogenes identified by D Torrents and Peer Bork based on human build 34 |
| Genome Build | NCBI36 |
| Transcribed Pseudogenes | view all download |
|---|---|
| Source | Harrison PM, Zheng D, Zhang Z, Carrier N, Gerstein M. 2005. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res 33:2374-83. |
| Original Build | 34 |
| DateCreated | 2009-02-11T09:41:00 |
| Description | Pseudogenes identified as being transcribed. |
| Genome Build | NCBI36 |
| UCSC Pseudogenes | view all download |
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| UCSC Yontao Pseudogenes | view all download |
|---|---|
| Source | UCSC |
| Genome Build | NCBI36 |